Robert Allan JamesandClaude Sonnet 5
8717416d36
LITHOS_VERSION 2.0.1 was premature: per this project's own versioning policy, 2.0.1 claims SER5 hardware-track progress (RDRAND backend + thumbdrive image) that was never actually verified on real hardware -- that verification is FABRIC-3.md's own open topic. Reset to 2.0.0 (still a QEMU-only release, correctly). Verified 3-arch boot shows "LithosAnanke v2.0.0" in each serial log directly, not assumed from the Makefile edit alone. Also closes a real gap found in today's earlier FABRIC-series rename: Makefile.starkernel, Kconfig.kernel, scripts/bleach_zuse_img.sh, four proof/*.thy files, and isr.S were never swept -- the original file list only matched *.md/*.c/*.h/*.4th, silently skipping every other extension. Fixed with the same safe placeholder substitution. .claude/settings.local.json's historical permission-grant log and ClaudeEXPORT/'s frozen export were deliberately left untouched. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_019YcT3H2PQeyujrzjqS3Var
scripts/
Utility scripts for building, profiling, DoE experiments, and documentation.
DoE / experiment scripts
| Script | Purpose |
|---|---|
run_doe.sh |
Run a standard DoE experiment |
run_factorial_doe.sh |
2^7 factorial DoE |
run_factorial_doe_with_heartbeat.sh |
Factorial DoE with heartbeat metrics |
run_nested_doe.sh |
Nested DoE design |
run_ablation_study.sh |
Physics loop ablation |
run_optimization_doe.sh |
Optimization-focused DoE |
run_quick_doe_test.sh |
Quick smoke-check DoE (1 rep) |
extract_doe.sh |
Extract CSV rows from QEMU serial logs |
Build / profile scripts
| Script | Purpose |
|---|---|
perf-profile.sh |
Linux perf profiling harness |
perf-profile_control.sh |
Control run for perf comparison |
rundisk.sh |
Boot a disk image in QEMU |
qemu_screenshot.sh |
Capture QEMU serial output |
Phase 8 / identity testing scripts
| Script | Purpose |
|---|---|
bleach_zuse_img.sh |
Reset disk/zuse.img back to pristine/unminted (blank) state, for repeatable first-boot mint-flow testing |
FORTH capsule scripts
| Script | Purpose |
|---|---|
4th-apply-init.sh |
Apply init.4th patches to capsule set |
4th-update-init.sh |
Update init.4th across capsule variants |
Documentation scripts
| Script | Purpose |
|---|---|
asciidoc-to-latex.sh |
Convert AsciiDoc to LaTeX |
convert-markdown-to-asciidoc.sh |
Markdown → AsciiDoc |
doxygen-xml-to-asciidoc.py |
Doxygen XML → AsciiDoc |
generate-doxygen-appendix.sh |
Build Doxygen API appendix |
build_patent_structure.sh |
Scaffold patent document structure |
setup-ide-integration.sh |
Configure IDE integration |
analyze_heartbeat_stability.R |
R analysis of heartbeat stability data |
analyze_opp2_regression.py |
Python regression analysis |
gen_pe_reloc.py |
PE relocation table generator (see also tools/) |
remove_loop_conditionals.sh |
Remove loop conditional guards |
See also
experiments/bare_metal/README.md— DoE protocols- Project root